Archaea, Bacteria, and Eukaryota

This page describes taxonomic domains. For protein domains, see Protein Domain.

Cellular organisms are divided into three domains—archaea, bacteria, and eukaryota. These three domains are distinguished by the fact that they have substantially different Ribosomal RNA. Archaea and Bacteria are prokaryotic, that is, they do not have a distinct nucleus. A prokaryote is essentially a bag of molecules, while a eukaryote is a complex set of functional components.

The idea that archaea were as different from bacteria as bacteria were from eukaryotes was first proposed by Carl Woese and George E. Fox in 1977, based on studies of the evolutionary distance between the DNA of species in the three groups. At one time it was thought archaea were extremophiles; that is, they preferred extreme temperatures or high concentrations of salt or sulfur. The theory was that early life forms (archaea) needed to be able to survive in extreme conditions and then later forms (bacteria and eukaryotes) would arise as conditions became milder. In recent years, however, archaea have been found in many different environments and are now considered to be as diverse as bacteria.

The tables below show the archaea, bacteria, and eukaryotes in the Sprout Database. Click on an organism name to see its page in the Genome Viewer.

ARCHAEABACTERIAEUKARYOTA
scientific-name id
Aeropyrum pernix K1 272557.1
Archaeoglobus fulgidus DSM 4304 224325.1
Caldivirga maquilingensis IC-167 397948.3
Ferroplasma acidarmanus 97393.1
Haloarcula marismortui ATCC 43049 272569.1
Halobacterium sp. NRC-1 64091.1
Halogeometricum borinquense DSM 11551 469382.4
Halomicrobium mukohataei DSM 12286 485914.4
Haloquadratum walsbyi DSM 16790 362976.6
Halorhabdus utahensis DSM 12940 519442.4
Korarchaeum cryptofilum OPF8 374847.3
Metallosphaera sedula DSM 5348 399549.6
Methanocaldococcus jannaschii DSM 2661 243232.1
Methanococcoides burtonii DSM 6242 259564.8
Methanococcus aeolicus Nankai-3 419665.8
Methanococcus maripaludis C5 402880.8
Methanococcus maripaludis C6 444158.3
Methanococcus maripaludis C7 426368.9
Methanococcus maripaludis S2 267377.1
Methanococcus vannieli vannielii SB 406327.7
Methanoculleus marisnigri JR1 368407.6
Methanopyrus kandleri AV19 190192.1
Methanoregula boonei 6A8 456442.1
Methanosaeta thermophila PT 349307.9
Methanosarcina acetivorans C2A 188937.1
Methanosarcina barkeri str. fusaro 269797.3
Methanosarcina mazei Go1 192952.1
Methanosphaera stadtmanae DSM 3091 339860.6
Methanospirillum hungatei JF-1 323259.5
Methanothermobacter thermautotrophicus str. Delta H 187420.1
Nanoarchaeum equitans Kin4-M 228908.1
Natronomonas pharaonis DSM 2160 348780.3
Nitrosopumilus maritimus SCM1 436308.3
Picrophilus torridus DSM 9790 263820.1
Pyrobaculum aerophilum str. IM2 178306.1
Pyrobaculum arsenaticum DSM 13514 340102.3
Pyrobaculum islandicum DSM 4184 384616.5
Pyrococcus abyssi GE5 272844.1
Pyrococcus furiosus DSM 3638 186497.1
Pyrococcus horikoshii OT3 70601.1
Sulfolobus acidocaldarius DSM 639 330779.3
Sulfolobus solfataricus P2 273057.1
Sulfolobus tokodaii str. 7 273063.1
Thermococcus kodakarensis KOD1 69014.3
Thermofilum pendens Hrk 5 368408.5
Thermoplasma acidophilum DSM 1728 273075.1
Thermoplasma volcanium GSS1 273116.1
scientific-name id
Acidiphilium cryptum JF-5 349163.4
Acidobacteria bacterium Ellin345 204669.6
Acidothermus cellulolyticus 11B 351607.5
Acidovorax avenae subsp. citrulli AAC00-1 397945.5
Acidovorax sp. JS42 232721.5
Acinetobacter baumannii ATCC 17978 400667.4
Acinetobacter sp. ADP1 62977.3
Actinobacillus pleuropneumoniae L20 416269.5
Actinobacillus pleuropneumoniae serovar 1 str. 4074 228399.1
Actinobacillus succinogenes 130Z 339671.5
Actinosynnema mirum DSM 43827 446462.5
Aeromonas hydrophila subsp. hydrophila ATCC 7966 380703.5
Aeromonas salmonicida subsp. salmonicida A449 382245.6
Agrobacterium tumefaciens str. C58 176299.3
Akkermansia muciniphila ATCC BAA-835 349741.3
Alcanivorax borkumensis SK2 393595.12
Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 521098.4
Aliivibrio salmonicida LFI1238 316275.9
Alkalilimnicola ehrlichei MLHE-1 187272.6
Alkaliphilus metalliredigens QYMF 293826.4
Alkaliphilus oremlandi oremlandii OhILAs 350688.3
Alteromonas macleodii 'Deep ecotype' 314275.3
Amoebophilus asiaticus 5a2 452471.3
Anabaena variabilis ATCC 29413 240292.3
Anaerococcus prevoti prevotii DSM 20548 525919.4
Anaeromyxobacter dehalogenans 2CP-C 290397.13
Anaeromyxobacter sp. Fw109-5 404589.4
Anaplasma marginale str. St. Maries 234826.3
Anaplasma phagocytophilum HZ 212042.5
Aquifex aeolicus VF5 224324.1
Aster yellows witches'-broom phytoplasma AYWB 322098.19
Atopobium parvulum DSM 20469 521095.5
Aurantimonas sp. SI85-9A1 314269.3
Azoarcus sp. EbN1 76114.4
Azotobacter vinelandii 354.1
Bacillus B-14905 101031.3
Bacillus anthracis str. 'Ames Ancestor' 261594.1
Bacillus anthracis str. A1055 280355.3
Bacillus anthracis str. Ames 198094.1
Bacillus anthracis str. Australia 94 280477.3
Bacillus anthracis str. CNEVA-9066 280354.3
Bacillus anthracis str. Kruger B 205919.3
Bacillus anthracis str. Sterne 260799.1
Bacillus anthracis str. Vollum 261591.3
Bacillus cereus ATCC 10987 222523.1
Bacillus cereus ATCC 14579 226900.1
Bacillus cereus G9241 269801.1
Bacillus cereus ZK 288681.3
Bacillus cereus subsp. cytotoxis NVH 391-98 315749.4
Bacillus clausii KSM-K16 66692.3
Bacillus halodurans C-125 272558.1
Bacillus licheniformis ATCC 14580 279010.5
Bacillus subtilis subsp. subtilis str. 168 224308.1
Bacillus thuringiensis serovar konkukian str. 97-27 281309.1
Bacillus thuringiensis serovar konkukian str. 97-27 281309.3
Bacillus thuringiensis str. Al Hakam 412694.5
Bacillus weihenstephanensis KBAB4 315730.5
Bacteriovorax marinus SJ 97084.1
Bacteroides fragilis 638R 817.1
Bacteroides fragilis ATCC 25285 272559.3
Bacteroides fragilis YCH46 295405.3
Bacteroides thetaiotaomicron VPI-5482 226186.1
Bacteroides vulgatus ATCC 8482 435590.6
Bartonella bacilliformis KC583 360095.3
Bartonella henselae str. Houston-1 283166.1
Bartonella quintana str. Toulouse 283165.1
Bdellovibrio bacteriovorus HD100 264462.1
Beutenbergia caverna cavernae DSM 12333 471853.4
Bifidobacterium adolescentis 1680.3
Bifidobacterium longum DJO10A 205913.1
Bifidobacterium longum NCC2705 206672.1
Blastopirellula marina DSM 3645 314230.3
Blochmannia floridanus 203907.1
Blochmannia pennsylvanicus str. BPEN 291272.3
Bordetella avium 521.1
Bordetella bronchiseptica RB50 257310.1
Bordetella parapertussis 12822 257311.1
Bordetella pertussis Tohama I 257313.1
Borrelia afzelii PKo 390236.5
Borrelia burgdorferi B31 224326.1
Borrelia garinii PBi 290434.1
Brachybacterium faecium DSM 4810 446465.4
Brachyspira murdochi murdochii DSM 12563 526224.4
Bradyrhizobium japonicum USDA 110 224911.1
Bradyrhizobium sp. BTAi1 288000.5
Brevibacterium linens BL2 321955.3
Brucella abortus biovar 1 str. 9-941 262698.3
Brucella canis ATCC 23365 483179.3
Brucella melitensis 16M 224914.1
Brucella suis 1330 204722.1
Brucella suis ATCC 23445 470137.3
Buchnera aphidicola str. APS (Acyrthosiphon pisum) 107806.1
Buchnera aphidicola str. Bp (Baizongia pistaciae) 224915.1
Buchnera aphidicola str. Sg (Schizaphis graminum) 198804.1
Burkholderia ambifaria AMMD 339670.3
Burkholderia cenocepacia AU 1054 331271.3
Burkholderia cenocepacia HI2424 331272.3
Burkholderia cenocepacia J2315 216591.1
Burkholderia cenocepacia PC184 350702.3
Burkholderia cepacia R1808 269482.1
Burkholderia cepacia R18194 269483.3
Burkholderia dolosa AUO158 350701.3
Burkholderia fungorum 134537.1
Burkholderia mallei 10229 320386.3
Burkholderia mallei 10399 320387.3
Burkholderia mallei ATCC 23344 243160.4
Burkholderia mallei FMH 334802.3
Burkholderia mallei GB8 horse 4 320390.3
Burkholderia mallei JHU 334803.3
Burkholderia mallei NCTC 10247 320389.3
Burkholderia mallei SAVP1 320388.3
Burkholderia multivorans ATCC 17616 395019.3
Burkholderia pseudomallei 1655 331109.3
Burkholderia pseudomallei 1710a 320371.3
Burkholderia pseudomallei 1710b 320372.3
Burkholderia pseudomallei 668 320373.3
Burkholderia pseudomallei K96243 272560.3
Burkholderia pseudomallei Pasteur 331978.3
Burkholderia pseudomallei S13 320374.3
Burkholderia vietnamiensis strain G4 269482.4
Burkholderia xenovorans LB400 36873.1
Caldicellulosiruptor saccharolyticus DSM 8903 351627.4
Campylobacter coli RM2228 306254.1
Campylobacter concisus 13826 360104.4
Campylobacter curvus 525.92 360105.6
Campylobacter fetus subsp. fetus 82-40 360106.5
Campylobacter hominis ATCC BAA-381 360107.5
Campylobacter jejuni RM1221 195099.3
Campylobacter jejuni subsp. doylei 269.97 360109.7
Campylobacter jejuni subsp. jejuni 260.94 360108.3
Campylobacter jejuni subsp. jejuni 81-176 354242.8
Campylobacter jejuni subsp. jejuni 84-25 360110.3
Campylobacter jejuni subsp. jejuni CF93-6 360111.3
Campylobacter jejuni subsp. jejuni HB93-13 360112.3
Campylobacter jejuni subsp. jejuni NCTC 11168 192222.1
Campylobacter lari RM2100 306263.1
Campylobacter upsaliensis RM3195 306264.1
Carboxydothermus hydrogenoformans Z-2901 246194.3
Catenulispora acidiphila DSM 44928 479433.4
Caulobacter crescentus CB15 190650.1
Caulobacter sp. K31 366602.3
Cellulomonas flavigena DSM 20109 446466.5
Cellulophaga sp. MED134 313590.3
Cellvibrio japonicus Ueda107 498211.3
Chitinophaga pinensis DSM 2588 485918.5
Chlamydia muridarum Nigg 243161.4
Chlamydia trachomatis A/HAR-13 315277.3
Chlamydia trachomatis D/UW-3/CX 272561.1
Chlamydophila abortus S26/3 218497.4
Chlamydophila caviae GPIC 227941.1
Chlamydophila felis Fe/C-56 264202.3
Chlamydophila pneumoniae AR39 115711.7
Chlamydophila pneumoniae CWL029 115713.1
Chlamydophila pneumoniae J138 138677.1
Chlamydophila pneumoniae TW-183 182082.1
Chlorobium chlorochromatii CaD3 340177.8
Chlorobium phaeobacteroides DSM 266 290317.7
Chlorobium tepidum TLS 194439.1
Chloroflexus aurantiacus J-10-fl 324602.4
Chromobacterium violaceum ATCC 12472 243365.1
Chromohalobacter salexigens DSM 3043 290398.4
Clavibacter michiganensis subsp. michiganensis NCPPB 382 443906.9
Clostridium acetobutylicum ATCC 824 272562.1
Clostridium beijerincki beijerinckii NCIMB 8052 290402.34
Clostridium botulinum A str. ATCC 19397 441770.4
Clostridium botulinum A str. ATCC 3502 413999.4
Clostridium botulinum A str. Hall 441771.4
Clostridium difficile 630 1496.1
Clostridium kluyveri DSM 555 431943.4
Clostridium perfringens str. 13 195102.1
Clostridium phytofermentans ISDg 357809.4
Clostridium tetani E88 212717.1
Clostridium thermocellum ATCC 27405 203119.1
Colwellia psychrerythraea 34H 167879.3
Conexibacter woesei DSM 14684 469383.4
Corynebacterium diphtheriae NCTC 13129 257309.1
Corynebacterium efficiens YS-314 196164.1
Corynebacterium glutamicum ATCC 13032 196627.4
Corynebacterium jeikeium K411 306537.3
Coxiella burnetii RSA 493 227377.1
Croceibacter atlanticus HTCC2559 216432.3
Cryptobacterium curtum DSM 15641 469378.4
Cupriavidus metallidurans CH34 266264.4
Cyanothece sp. ATCC 51142 43989.3
Cytophaga hutchinsonii ATCC 33406 269798.12
Dechloromonas aromatica RCB 159087.4
Dehalococcoides ethenogenes 195 243164.3
Dehalococcoides sp. BAV1 216389.5
Dehalococcoides sp. CBDB1 255470.3
Deinococcus geothermalis DSM11300 68909.1
Deinococcus radiodurans R1 243230.1
Delftia acidovorans SPH-1 398578.3
Denitrovibrio acetiphilus DSM 12809 522772.4
Desulfitobacterium hafniense DCB-2 272564.4
Desulfitobacterium sp. Y51 138119.3
Desulfococcus oleovorans Hxd3 96561.3
Desulfohalobium retbaense DSM 5692 485915.4
Desulfomicrobium baculatum DSM 4028 525897.4
Desulforudis audaxviator MP104C 477974.3
Desulfotalea psychrophila LSv54 177439.1
Desulfotomaculum acetoxidans DSM 771 485916.4
Desulfotomaculum reducens MI-1 349161.4
Desulfovibrio desulfuricans G20 207559.3
Desulfovibrio vulgaris subsp. vulgaris DP4 391774.5
Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough 882.1
Desulfuromonas acetoxidans 891.1
Dethiosulfovibrio peptidovorans DSM 11002 469381.4
Dinoroseobacter shibae DFL 12 398580.3
Dyadobacter fermentans DSM 18053 471854.4
Eggerthella lenta DSM 2243 479437.4
Ehrlichia canis str. Jake 269484.4
Ehrlichia chaffeensis str. Arkansas 205920.8
Ehrlichia ruminantium str. Gardel 302409.3
Ehrlichia ruminantium str. Welgevonden 254945.3
Elusimicrobium minutum Pei191 445932.3
Enterobacter sp. 638 399742.4
Enterococcus faecalis V583 226185.1
Erwinia carotovora subsp. atroseptica SCRI1043 218491.3
Erythrobacter litoralis HTCC2594 314225.3
Erythrobacter sp. NAP1 237727.3
Escherichia coli 042 216592.1
Escherichia coli 53638 344610.3
Escherichia coli APEC O1 405955.9
Escherichia coli ATCC 8739 481805.3
Escherichia coli B171 344601.3
Escherichia coli B7A 340184.3
Escherichia coli CFT073 199310.1
Escherichia coli E110019 340186.3
Escherichia coli E22 340185.3
Escherichia coli E2348/69 216593.1
Escherichia coli E24377A 331111.3
Escherichia coli F11 340197.3
Escherichia coli HS 331112.3
Escherichia coli K12 83333.1
Escherichia coli O157:H7 83334.1
Escherichia coli O157:H7 EDL933 155864.1
Escherichia coli W3110 316407.3
Exiguobacterium sibiricum 255-15 262543.4
Exiguobacterium sp. 255-15 262543.1
Fervidobacterium nodosum Rt17-B1 381764.6
Flavobacteria sp. BBFL7 156586.3
Flavobacteriales bacterium HTCC2170 313603.3
Flavobacterium johnsonia johnsoniae UW101 376686.6
Flavobacterium psychrophilum JIP02/86 402612.4
Flavobacterium sp. MED217 313593.3
Francisella philomiragia subsp. philomiragia ATCC 25017 484022.4
Francisella tularensis subsp. holarctica FTA 458234.1
Francisella tularensis subsp. holarctica OSU18 393011.11
Francisella tularensis subsp. novicida U112 401614.5
Francisella tularensis subsp. tularensis FSC198 393115.8
Francisella tularensis subsp. tularensis Schu 4 177416.3
Francisella tularensis subsp. tularensis WY96-3418 418136.4
Frankia sp. Ccl3 106370.11
Frankia sp. EAN1pec 298653.4
Fusobacterium nucleatum subsp. nucleatum ATCC 25586 190304.1
Geobacillus kaustophilus HTA426 235909.3
Geobacillus thermodenitrificans NG80-2 420246.5
Geobacter metallireducens GS-15 269799.3
Geobacter sulfurreducens PCA 243231.1
Geobacter uraniireducens Rf4 351605.4
Geobacter uraniumreducens Rf4 351605.3
Geodermatophilus obscurus DSM 43160 526225.5
Gloeobacter violaceus PCC 7421 251221.1
Gluconobacter oxydans 621H 290633.1
Gordonia bronchialis DSM 43247 526226.5
Gramella forsetii KT0803 411154.5
Granulibacter bethesdensis CGDNIH1 391165.8
Haemophilus ducreyi 35000HP 233412.1
Haemophilus influenzae 86-028NP 281310.3
Haemophilus influenzae R2846 262727.1
Haemophilus influenzae R2866 262728.1
Haemophilus influenzae Rd KW20 71421.1
Haemophilus somnus 129PT 205914.1
Haemophilus somnus 129PT 205914.5
Haemophilus somnus 2336 228400.1
Haemophilus somnus 2336 228400.4
Hahella chejuensis KCTC 2396 349521.5
Haliangium ochraceum DSM 14365 502025.5
Halorhodospira halophila SL1 349124.5
Helicobacter acinonychis str. Sheeba 382638.8
Helicobacter hepaticus ATCC 51449 235279.1
Helicobacter mustelae 43772 217.1
Helicobacter pylori 26695 85962.1
Helicobacter pylori J99 85963.1
Herminiimonas arsenicoxydans 204773.3
Herpetosiphon aurantiacus ATCC 23779 316274.3
Hyphomonas neptunium ATCC 15444 228405.5
Idiomarina baltica OS145 314276.3
Idiomarina loihiensis L2TR 283942.3
Janibacter sp. HTCC2649 313589.3
Jonesia denitrificans DSM 20603 471856.4
Kangiella koreensis DSM 16069 523791.4
Kineococcus radiotolerans SRS30216 266940.5
Klebsiella pneumoniae MGH 78578 272620.3
Kribbella flavida DSM 17836 479435.4
Kytococcus sedentarius DSM 20547 478801.4
Lactobacillus acidophilus NCFM 272621.3
Lactobacillus brevis ATCC 367 387344.13
Lactobacillus casei ATCC 334 321967.8
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 321956.5
Lactobacillus gasseri 1596.1
Lactobacillus gasseri ATCC 33323 324831.1
Lactobacillus johnsonii NCC 533 257314.1
Lactobacillus plantarum WCFS1 220668.1
Lactobacillus reuteri F275 299033.6
Lactococcus lactis subsp. cremoris SK11 272622.8
Lactococcus lactis subsp. lactis Il1403 272623.1
Legionella pneumophila str. Lens 297245.3
Legionella pneumophila str. Paris 297246.3
Legionella pneumophila subsp. pneumophila str. Philadelphia 1 272624.3
Leifsonia xyli subsp. xyli str. CTCB07 281090.3
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 267671.1
Leptospira interrogans serovar Lai str. 56601 189518.1
Leptothrix cholodni SP-6 395495.3
Leptotrichia buccalis DSM 1135 523794.4
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 203120.1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 203120.4
Listeria innocua Clip11262 272626.1
Listeria monocytogenes 10403S 393133.3
Listeria monocytogenes Aureli 1997 401650.3
Listeria monocytogenes EGD-e 169963.1
Listeria monocytogenes F6900 393128.3
Listeria monocytogenes FSL J1-194 393117.3
Listeria monocytogenes FSL J2-071 393121.3
Listeria monocytogenes FSL N1-017 393123.3
Listeria monocytogenes FSL N3-165 393124.3
Listeria monocytogenes FSL R2-503 393125.3
Listeria monocytogenes J0161 393130.3
Listeria monocytogenes J2818 393131.3
Listeria monocytogenes str. 1/2a F6854 267409.1
Listeria monocytogenes str. 4b F2365 265669.1
Listeria monocytogenes str. 4b H7858 267410.1
Listeria welshimeri serovar 6b str. SLCC5334 386043.6
Loktanella vestfoldensis SKA53 314232.3
Magnetococcus sp. MC-1 156889.7
Magnetospirillum gryphiswaldense MSR-1 431944.4
Magnetospirillum magneticum AMB-1 342108.5
Mannheimia succiniciproducens MBEL55E 221988.1
Maricaulis maris MCS10 394221.5
Marinobacter hydrocarbonoclasticus aquaeolei VT8 351348.5
Marinomonas sp. MWYL1 400668.6
Meiothermus ruber DSM 1279 504728.4
Meiothermus silvanus DSM 9946 526227.4
Mesoplasma florum L1 265311.3
Mesorhizobium loti MAFF303099 266835.1
Mesorhizobium sp. BNC1 266779.1
Methylobacillus flagellatus KT 265072.7
Methylobacterium extorquens PA1 419610.8
Methylobacterium sp. 4-46 426117.3
Methylococcus capsulatus str. Bath 243233.4
Moorella thermoacetica ATCC 39073 264732.9
Mycobacterium avium subsp. paratuberculosis str. k10 262316.1
Mycobacterium bovis AF2122/97 233413.1
Mycobacterium bovis BCG str. Pasteur 1173P2 410289.13
Mycobacterium leprae TN 272631.1
Mycobacterium marinum M 216594.1
Mycobacterium microti OV254 1806.1
Mycobacterium smegmatis str. MC2 155 246196.1
Mycobacterium sp. JLS 164757.7
Mycobacterium sp. MCS 164756.6
Mycobacterium tuberculosis CDC1551 83331.1
Mycobacterium tuberculosis F11 336982.3
Mycobacterium tuberculosis H37Ra 419947.3
Mycobacterium tuberculosis H37Rv 83332.1
Mycobacterium vanbaaleni vanbaalenii PYR-1 350058.5
Mycoplasma capricolum subsp. capricolum ATCC 27343 340047.1
Mycoplasma gallisepticum R 233150.3
Mycoplasma genitalium G-37 243273.1
Mycoplasma hyopneumoniae 232 295358.3
Mycoplasma hyopneumoniae 7448 262722.3
Mycoplasma hyopneumoniae J 262719.3
Mycoplasma mobile 163K 267748.1
Mycoplasma mycoides subsp. mycoides SC str. PG1 272632.1
Mycoplasma penetrans HF-2 272633.1
Mycoplasma pneumoniae M129 272634.1
Mycoplasma pulmonis UAB CTIP 272635.1
Mycoplasma synoviae 53 262723.3
Myxococcus xanthus DK 1622 246197.19
Nakamurella multipartita DSM 44233 479431.5
Natranaerobius thermophilus JW/NM-WN-LF 457570.7
Neisseria gonorrhoeae FA 1090 242231.4
Neisseria lactamica ST-640 486.1
Neisseria meningitidis FAM18 487.2
Neisseria meningitidis MC58 122586.1
Neisseria meningitidis Z2491 122587.1
Neorickettsia sennetsu str. Miyayama 222891.5
Nitrobacter hamburgensis X14 323097.3
Nitrobacter sp. Nb-311A 314253.3
Nitrobacter winogradskyi Nb-255 323098.3
Nitrococcus mobilis Nb-231 314278.3
Nitrosococcus oceani ATCC 19707 323261.3
Nitrosomonas europaea ATCC 19718 228410.1
Nitrosomonas eutropha C91 335283.5
Nitrosospira multiformis ATCC 25196 323848.3
Nocardia farcinica IFM 10152 247156.1
Nocardioides sp. JS614 196162.6
Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 446468.4
Nostoc punctiforme PCC 73102 63737.1
Nostoc punctiforme PCC 73102 63737.4
Nostoc sp. PCC 7120 103690.1
Novosphingobium aromaticivorans 48935.1
Oceanicaulis alexandrii HTCC2633 314254.3
Oceanicola batsensis HTCC2597 252305.3
Oceanobacillus iheyensis HTE831 221109.1
Oenococcus oeni PSU-1 203123.1
Onion yellows phytoplasma OY-M 262768.1
Parachlamydia sp. UWE25 264201.1
Paracoccus denitrificans PD1222 318586.4
Parvibaculum lavamentivorans DS-1 402881.6
Parvularcula bermudensis HTCC2503 314260.3
Pasteurella multocida subsp. multocida str. Pm70 272843.1
Pediococcus pentosaceus ATCC 25745 278197.1
Pedobacter heparinus DSM 2366 485917.5
Pelagibacter ubique HTCC1062 335992.3
Pelobacter carbinolicus DSM 2380 338963.3
Pelobacter propionicus DSM 2379 338966.5
Pelodictyon luteolum DSM 273 319225.3
Petrotoga mobilis SJ95 403833.5
Photobacterium profundum 3TCK 314280.3
Photobacterium profundum SS9 298386.1
Photorhabdus asymbiotica subsp. asymbiotica 171440.1
Photorhabdus luminescens subsp. laumondii TTO1 243265.1
Pirellula sp. 1 243090.1
Planctomyces limnophilus DSM 3776 521674.4
Polaribacter irgensii 23-P 313594.3
Polaromonas sp. JS666 296591.1
Polynucleobacter sp. QLW-P1DMWA-1 312153.3
Porphyromonas gingivalis W83 242619.1
Prochlorococcus marinus str. MIT 9211 93059.3
Prochlorococcus marinus str. MIT 9312 74546.3
Prochlorococcus marinus str. MIT 9313 74547.1
Prochlorococcus marinus str. NATL2A 59920.3
Prochlorococcus marinus subsp. marinus str. CCMP1375 167539.1
Prochlorococcus marinus subsp. pastoris str. CCMP1986 59919.1
Propionibacterium acnes KPA171202 267747.1
Prosthecochloris vibrioformis DSM 265 290318.4
Proteus mirabilis HI4320 584.1
Pseudoalteromonas atlantica T6c 342610.3
Pseudoalteromonas haloplanktis TAC125 326442.4
Pseudoalteromonas tunicata D2 87626.3
Pseudomonas aeruginosa 2192 350703.3
Pseudomonas aeruginosa PAO1 208964.1
Pseudomonas aeruginosa UCBPP-PA14 208963.3
Pseudomonas entomophila L48 384676.6
Pseudomonas fluorescens Pf-5 220664.3
Pseudomonas fluorescens PfO-1 205922.3
Pseudomonas fluorescens SBW25 216595.1
Pseudomonas mendocina ymp 399739.6
Pseudomonas putida F1 351746.4
Pseudomonas putida GB-1 76869.3
Pseudomonas putida KT2440 160488.1
Pseudomonas putida W619 390235.3
Pseudomonas syringae pv. phaseolicola 1448A 264730.3
Pseudomonas syringae pv. syringae B728a 205918.4
Pseudomonas syringae pv. tomato str. DC3000 223283.1
Psychrobacter cryohalolentis K5 335284.3
Psychrobacter sp. 273-4 259536.4
Psychrobacter sp. PRwf-1 349106.5
Psychromonas ingrahami ingrahamii 37 357804.5
Psychromonas sp. CNPT3 314282.3
Ralstonia eutropha JMP134 264198.3
Ralstonia solanacearum GMI1000 267608.1
Reinekea sp. MED297 314283.3
Rhizobium leguminosarum bv. viciae 3841 216596.1
Rhodobacter sphaeroides 2.4.1 272943.3
Rhodobacter sphaeroides ATCC 17025 349102.4
Rhodobacter sphaeroides ATCC 17029 349101.4
Rhodobacterales bacterium HTCC2654 314271.3
Rhodoferax ferrireducens DSM 15236 338969.3
Rhodopseudomonas palustris BisA53 316055.14
Rhodopseudomonas palustris BisB18 316056.14
Rhodopseudomonas palustris BisB5 316057.3
Rhodopseudomonas palustris CGA009 258594.1
Rhodopseudomonas palustris HaA2 316058.9
Rhodospirillum rubrum 1085.1
Rhodothermus marinus DSM 4252 518766.5
Rickettsia akari str. Hartford 293614.3
Rickettsia bellii RML369-C 336407.4
Rickettsia conorii str. Malish 7 272944.1
Rickettsia felis URRWXCal2 315456.3
Rickettsia prowazekii str. Madrid E 272947.1
Rickettsia rickettsii 783.1
Rickettsia sibirica 35793.1
Rickettsia typhi str. Wilmington 257363.1
Robiginitalea biformata HTCC2501 313596.3
Roseiflexus castenholzi DSM 13941 383372.4
Roseiflexus sp. RS-1 357808.3
Roseobacter Sp. GAI101 2433.3
Roseobacter denitrificans OCh 114 375451.6
Roseobacter sp. MED193 314262.3
Roseovarius nubinhibens ISM 89187.3
Roseovarius sp. 217 314264.3
Rubrobacter xylanophilus DSM 9941 266117.6
Saccharomonospora viridis DSM 43017 471857.4
Saccharophagus degradans 2-40 203122.12
Salinibacter ruber DSM 13855 309807.5
Salinispora arenicola CNS-205 391037.3
Salinispora tropica CNB-440 369723.3
Salmonella bongori 12149 12149.1
Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67 321314.4
Salmonella enterica subsp. enterica serovar Gallinarum 594.1
Salmonella enterica subsp. enterica serovar Paratypi A str. ATCC 9150 295319.3
Salmonella enterica subsp. enterica serovar Typhi Ty2 209261.1
Salmonella enterica subsp. enterica serovar Typhi str. CT18 220341.1
Salmonella typhimurium LT2 99287.1
Sanguibacter keddiei keddieii DSM 10542 446469.4
Sebaldella termitidis ATCC 33386 526218.4
Serratia marcescens Db11 615.1
Serratia proteamaculans 568 399741.3
Shewanella amazonensis SB2B 326297.7
Shewanella baltica OS155 325240.3
Shewanella baltica OS155 325240.9
Shewanella baltica OS185 402882.1
Shewanella baltica OS195 399599.3
Shewanella denitrificans OS217 318161.14
Shewanella frigidimarina NCIMB 400 318167.1
Shewanella halifaxensis HAW-EB4 458817.3
Shewanella oneidensis MR-1 211586.1
Shewanella pealeana ATCC 700345 398579.3
Shewanella putrefaciens CN-32 319224.13
Shewanella sediminis HAW-EB3 425104.3
Shewanella sp. MR-4 60480.16
Shewanella sp. MR-7 60481.1
Shewanella sp. PV-4 323850.3
Shewanella sp. W3-18-1 351745.7
Shewanella sp.ANA-3 94122.5
Shewanella woodyi ATCC 51908 392500.3
Shigella boydii BS512 344609.3
Shigella dysenteriae M131649 216598.1
Shigella flexneri 2a str. 2457T 198215.1
Shigella flexneri 2a str. 301 198214.1
Shigella sonnei 53G 216599.1
Shigella sonnei Ss046 300269.3
Silicibacter pomeroyi DSS-3 246200.3
Silicibacter sp. TM1040 292414.1
Sinorhizobium meliloti 1021 266834.1
Slackia heliotrinireducens DSM 20476 471855.4
Sodalis glossinidius str. 'morsitans' 343509.6
Solibacter usitatus Ellin6076 234267.9
Sorangium cellulosum So ce 56 448385.11
Sphaerobacter thermophilus DSM 20745 479434.4
Sphingomonas wittichii RW1 392499.4
Sphingopyxis alaskensis RB2256 317655.9
Spiroplasma kunkelii CR2-3x 273035.4
Spirosoma linguale DSM 74 504472.5
Stackebrandtia nassauensis DSM 44728 446470.4
Staphylococcus aureus RF122 273036.3
Staphylococcus aureus subsp. aureus COL 93062.4
Staphylococcus aureus subsp. aureus JH1 359787.3
Staphylococcus aureus subsp. aureus JH9 359786.3
Staphylococcus aureus subsp. aureus MRSA252 282458.1
Staphylococcus aureus subsp. aureus MSSA476 282459.1
Staphylococcus aureus subsp. aureus MW2 196620.1
Staphylococcus aureus subsp. aureus Mu3 418127.4
Staphylococcus aureus subsp. aureus Mu50 158878.1
Staphylococcus aureus subsp. aureus N315 158879.1
Staphylococcus aureus subsp. aureus NCTC 8325 93061.3
Staphylococcus aureus subsp. aureus USA300 367830.3
Staphylococcus aureus subsp. aureus str. Newman 426430.6
Staphylococcus epidermidis ATCC 12228 176280.1
Staphylococcus epidermidis RP62A 176279.3
Staphylococcus haemolyticus JCSC1435 279808.3
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 342451.4
Stenotrophomonas maltophilia K279a 40324.1
Streptobacillus moniliformis DSM 12112 519441.4
Streptococcus agalactiae 2603V/R 208435.1
Streptococcus agalactiae A909 205921.3
Streptococcus agalactiae NEM316 211110.1
Streptococcus equi subsp. equi 148942.4
Streptococcus gordonii str. Challis substr. CH1 467705.8
Streptococcus mitis NCTC 12261 246201.1
Streptococcus mutans UA159 210007.1
Streptococcus pneumonia pneumoniae D39 373153.25
Streptococcus pneumoniae 23F 216600.3
Streptococcus pneumoniae CDC0288-04 453364.7
Streptococcus pneumoniae CDC0288-04 453364.8
Streptococcus pneumoniae CDC1087-00 453361.3
Streptococcus pneumoniae CDC1873-00 453362.3
Streptococcus pneumoniae CDC3059-06 453365.3
Streptococcus pneumoniae CGSP14 516950.3
Streptococcus pneumoniae Hungary19A-6 487214.3
Streptococcus pneumoniae INV104B 1313.3
Streptococcus pneumoniae INV200 1313.4
Streptococcus pneumoniae OXC141 1313.5
Streptococcus pneumoniae R6 171101.1
Streptococcus pneumoniae SP11-BS70 406559.4
Streptococcus pneumoniae SP14-BS69 406560.4
Streptococcus pneumoniae SP18-BS74 406561.4
Streptococcus pneumoniae SP19-BS75 406562.4
Streptococcus pneumoniae SP195 453363.3
Streptococcus pneumoniae SP23-BS72 406563.4
Streptococcus pneumoniae SP3-BS71 406556.4
Streptococcus pneumoniae SP6-BS73 406557.4
Streptococcus pneumoniae SP9-BS68 406558.4
Streptococcus pneumoniae TIGR4 170187.1
Streptococcus pyogenes M1 GAS 160490.1
Streptococcus pyogenes M5 1314.1
Streptococcus pyogenes MGAS10270 370552.3
Streptococcus pyogenes MGAS10394 286636.1
Streptococcus pyogenes MGAS10750 370554.3
Streptococcus pyogenes MGAS2096 370553.3
Streptococcus pyogenes MGAS315 198466.1
Streptococcus pyogenes MGAS5005 293653.3
Streptococcus pyogenes MGAS6180 319701.3
Streptococcus pyogenes MGAS8232 186103.1
Streptococcus pyogenes MGAS9429 370551.3
Streptococcus pyogenes SSI-1 193567.1
Streptococcus sanguinis SK36 388919.8
Streptococcus thermophilus CNRZ1066 299768.3
Streptococcus thermophilus LMG 18311 264199.3
Streptococcus uberis 0140J 218495.3
Streptomyces avermitilis MA-4680 227882.1
Streptomyces coelicolor A3(2) 100226.1
Streptosporangium roseum DSM 43021 479432.4
Sulfitobacter sp. EE-36 52598.3
Sulfitobacter sp. NAS-14.1 314267.3
Sulfurospirillum deleyianum DSM 6946 525898.4
Sulfurovum sp. NBC37-1 387093.4
Symbiobacterium thermophilum IAM 14863 292459.1
Synechococcus elongatus PCC 6301 269084.3
Synechococcus elongatus PCC 7942 1140.3
Synechococcus sp. CC9311 64471.1
Synechococcus sp. CC9605 110662.3
Synechococcus sp. CC9902 316279.3
Synechococcus sp. RS9917 221360.3
Synechococcus sp. WH 5701 69042.3
Synechococcus sp. WH 7805 59931.3
Synechococcus sp. WH 8102 84588.1
Synechocystis sp. PCC 6803 1148.1
Syntrophobacter fumaroxidans MPOB 335543.6
Syntrophomonas wolfei subsp. wolfei str. Goettingen 335541.4
Syntrophus aciditrophicus SB 56780.1
Tenacibaculum sp. MED152 313598.3
Thermanaerovibrio acidaminovorans DSM 6589 525903.4
Thermoanaerobacter pseudethanolicus ATCC 33223 340099.4
Thermoanaerobacter sp. X514 399726.4
Thermoanaerobacter tengcongensis MB4 273068.3
Thermobaculum terrenum ATCC BAA-798 525904.4
Thermobifida fusca YX 269800.4
Thermobispora bispora DSM 43833 469371.4
Thermomonospora curvata DSM 43183 471852.4
Thermosipho melanesiensis BI429 391009.4
Thermosynechococcus elongatus BP-1 197221.1
Thermotoga maritima MSB8 243274.1
Thermotoga petrophila RKU-1 390874.1
Thermotoga sp. RQ2 126740.4
Thermus thermophilus HB27 262724.1
Thermus thermophilus HB8 300852.3
Thiobacillus denitrificans ATCC 25259 292415.3
Thiomicrospira crunogena XCL-2 317025.3
Thiomicrospira denitrificans ATCC 33889 326298.3
Treponema denticola ATCC 35405 243275.1
Treponema pallidum subsp. pallidum str. Nichols 243276.1
Trichodesmium erythraeum IMS101 203124.1
Tropheryma whipplei TW08/27 218496.1
Tropheryma whipplei str. Twist 203267.1
Tsukamurella paurometabola DSM 20162 521096.4
Ureaplasma parvum serovar 1 95656.5
Ureaplasma parvum serovar 14 95668.5
Ureaplasma parvum serovar 3 ATCC 700970 273119.1
Ureaplasma parvum serovar 6 95660.5
Ureaplasma urealyticum serovar 10 95664.5
Ureaplasma urealyticum serovar 11 95665.5
Ureaplasma urealyticum serovar 12 95666.5
Ureaplasma urealyticum serovar 13 95667.5
Ureaplasma urealyticum serovar 4 95658.4
Ureaplasma urealyticum serovar 5 95659.5
Ureaplasma urealyticum serovar 7 95661.4
Ureaplasma urealyticum serovar 8 95662.4
Ureaplasma urealyticum serovar 9 95663.4
Veillonella parvula DSM 2008 479436.4
Verminephrobacter eiseniae EF01-2 391735.5
Vibrio alginolyticus 12G01 314288.3
Vibrio angustum S14 314292.13
Vibrio cholerae 1587 412966.3
Vibrio cholerae 2740-80 412614.3
Vibrio cholerae AM-19226 404974.3
Vibrio cholerae MAK 757 412967.3
Vibrio cholerae MO10 345072.3
Vibrio cholerae MZO-3 412883.3
Vibrio cholerae NRT36s 88888881
Vibrio cholerae O1 biovar eltor str. N16961 243277.1
Vibrio cholerae O395 345073.6
Vibrio fischeri ES114 312309.3
Vibrio fischeri MJ11 388396.7
Vibrio harveyi ATCC BAA-1116 338187.4
Vibrio parahaemolyticus RIMD 2210633 223926.1
Vibrio sp. Ex25 150340.3
Vibrio sp. MED222 314290.3
Vibrio splendidus 12B01 314291.3
Vibrio vulnificus CMCP6 216895.1
Vibrio vulnificus YJ016 196600.1
Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis 36870.1
Wolbachia endosymbiont strain TRS of Brugia malayi 292805.3
Wolbachia pipientis quinquefasciatus 955.1
Wolbachia sp. endosymbiont of Drosophila melanogaster 163164.1
Wolinella succinogenes DSM 1740 273121.1
Xanthomonas axonopodis pv. citri str. 306 190486.1
Xanthomonas campestris pv. campestris ATCC 33913 190485.1
Xanthomonas campestris pv. campestris str. 8004 314565.3
Xanthomonas campestris pv. vesicatoria str. 85-10 316273.3
Xanthomonas oryzae pv. oryzae KACC10331 291331.3
Xylanimonas cellulosilytica DSM 15894 446471.4
Xylella fastidiosa 9a5c 160492.1
Xylella fastidiosa Ann-1 155920.1
Xylella fastidiosa M12 405440.3
Xylella fastidiosa Temecula1 183190.1
Yersinia bercovieri ATCC 43970 349968.3
Yersinia enterocolitica 8081 630.2
Yersinia frederiksenii ATCC 33641 349966.3
Yersinia intermedia ATCC 29909 349965.3
Yersinia mollaretii ATCC 43969 349967.3
Yersinia pestis Angola 349746.3
Yersinia pestis Antiqua 360102.4
Yersinia pestis CO92 214092.1
Yersinia pestis KIM 187410.1
Yersinia pestis Nepal516 377628.5
Yersinia pestis Pestoides F 386656.4
Yersinia pestis biovar Medievalis str. 91001 229193.1
Yersinia pseudotuberculosis IP 31758 349747.3
Yersinia pseudotuberculosis IP 32953 273123.1
Yersinia pseudotuberculosis YPIII 502800.3
Zymomonas mobilis subsp. mobilis ZM4 264203.3
gamma proteobacterium KT 71 314285.3
marine actinobacterium PHSC20C1 312284.3
Topic revision: r4 - 10 Feb 2009 - 15:25:06 - TWiki Guest
 
Notice to NMPDR Users - The NMPDR BRC contract has ended and bacterial data from NMPDR has been transferred to PATRIC (http://www.patricbrc.org), a new consolidated BRC for all NIAID category A-C priority pathogenic bacteria. NMPDR was a collaboration among researchers from the Computation Institute of the University of Chicago, the Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the National Center for Supercomputing Applications (NCSA) at the University of Illinois. NMPDR is funded by the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract HHSN266200400042C. Banner images are copyright © Dennis Kunkel.