NMPDR> FIG Web>NmpdrSearch > NmpdrSearchControls>GeneDisplayOptions  
 

The gene display options control the display of genes in the NMPDR Search Results.

GeneDisplayOptions.png

  • If Sort by Function is checked, the search output will be sorted by functional role.
  • If Show Protein Sequence is checked, the search output will contain the amino acid sequence for each ProteinEncodingGene.
  • If Show Alias Links is checked, the search output will contain a column for the aliases of each gene. You can specify a short prefix in the text box to force sorting of a particular type of alias to the front of the list.

In the search result fragment below, Show Alias Links has been specified and the prefix is cds. This has caused the alias cds.1080 to appear first in the alias list for fig|360108.3.peg.1080. There is no alias for fig|195099.3.peg.147 beginning with cds, so its alias list is unchanged.

Aliases.gif

Topic revision: r3 - 15 Oct 2008 - 19:04:09 - BruceParrello
 
NMPDR is a collaboration among researchers from the Computation Institute of the University of Chicago, the Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the National Center for Supercomputing Applications (NCSA) at the University of Illinois. NMPDR is funded by the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract HHSN266200400042C. Banner images are copyright © Dennis Kunkel.