The FIG web of TWiki. TWiki is a Web-Based Collaboration Platform for the Enterprise. http://www.nmpdr.org/FIG/wiki/view.cgi/FIG Copyright 2008 by contributing authors 2008-11-14T20:45:51Z http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/FigFamDescription 2008-11-14T20:45:51Z

FigFams: Yet Another Set of Protein Families What Are the FigFams? Each individual FigFam is a set of protein sequences, along with a decision procedure. All of ... (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SearchingByFunctionalRole 2008-10-17T04:49:13Z

Searching for Genes with Specific FunctionalRoles Using Keyword Seach There is no specific NMPDR search for genes by functional role; however, the functional ... (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/NmpdrBanner 2008-10-17T04:41:02Z

At the top of every page is a banner containing a search box, a graphic logo, and a navigation bar. The actual graphic logo used depends on the width of your display ... (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/FunctionalRole 2008-10-17T01:31:06Z

The functional role of a feature is the task it performs in the host organism. The role is stored in the NMPDR database as a descriptive phrase. Some functional ... (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/FigFam 2008-10-16T18:55:59Z

FigFams are sets of ProteinSequences that are similar along their full length. Proteins are thought of as implementing one or more abstract FunctionalRoles. All of ... (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/KeywordBox 2008-10-16T15:57:15Z

The NMPDR keyword search works like a typical search engine. You type in the appropriate words, and a list of genes will come back. Our keyword database contains millions ... (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/GeneDisplayOptions 2008-10-15T19:04:09Z

The gene display options control the display of genes in the NMPDR Search Results . /GeneDisplayOptions.png If Sort by Function is checked, the search output ... (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SeedEnvironment 2008-10-12T00:00:05Z

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BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/AliasesAndEquivalentGenes 2008-10-11T23:58:14Z

Basic Concepts In the NmpdrWebsite and SeedEnvironment databases, there is a general concept of a piece of DNA. In the databases and in the SEED, this is called a ... (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SpecialPurposeDatabases 2008-10-11T23:56:07Z

HOPS Database (Hypotheses and Open Problems revealed by Subsystems) Sequencing and analysis of hundreds, soon to be thousands, of genomes reveals multiple gaps in ... (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/StandardAmbiguityCode 2008-10-11T23:54:14Z

The standard ambiguity codes can be used to represent sets of possible values in a DNA sequence. Code Nucleotides M {A, C} R {A, G} W {A ... (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/WebHome 2008-10-11T23:53:21Z

The FIG Web This section of the site contains information to help you understand and use the NmpdrWebsite. Contents Glossary our terminology Grand ... (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/BasicTemplate 2008-10-11T23:52:24Z

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BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/DatabasesAndCodes 2008-10-11T23:49:31Z

This section contains information about the data available on the NmpdrWebsite. (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/AttributeDatabase 2008-10-11T23:48:19Z

var stuff ""; function GetDiagramData() { return stuff; } stuff '/FIG/AttributeDatabase, /, '; (last changed by BruceParrello)

BruceParrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/DNANucleotideCode 2008-10-11T23:47:08Z

The DNA nucleotide codes describe the four base compounds that make up a DNA sequence. The codes are as follows. Name Letter Type Pairs With Formula ... (last changed by BruceParrello)

BruceParrello