http://www.nmpdr.org/FIG/wiki/view.cgi/FIG The FIG web of TWiki. TWiki is a Web-Based Collaboration Platform for the Enterprise. en-us Copyright 2012 by contributing authors TWiki Administrator [admin@figresearch.com] The contributing authors of NMPDR NMPDR http://www.nmpdr.org/FIG/wiki/view.cgi/FIG http://www.nmpdr.org/FIG/wiki/pub/logos/nmpdrlogo.png http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/TWikiCustomTip030 Add NMPDR and PubMed search engines to your browser Go to Searchplugins.net to download quick keyword search plugins for NMPDR and PubMed that work in Firefox (Mac ... (last changed by LeslieMcNeil) 2009-05-31T04:19:46Z lmcneil http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SubsystemsApproach The Subsystems Approach to Genome Annotation The subsystems approach to genome annotation is the primary route by which the functional roles of genes ... (last changed by LeslieMcNeil) 2009-04-03T14:40:18Z lmcneil http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/RapidAnnotationServer RAST: the Rapid Annotation Server RAST (Rapid Annotation using Subsystem Technology) is a fully automated service for annotating bacterial and archaeal genomes ... (last changed by LeslieMcNeil) 2009-04-02T21:33:52Z lmcneil http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/TWikiCustomTip008 FIGfams FIGfams are sets of similar genes with the same . If you enter a protein sequence into the form on the main FigFam page, you can find all the genes in the ... (last changed by BruceParrello) 2009-04-02T07:04:04Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/TWikiCustomTip019 Keyword Box Most NMPDR search tools feature a . In the keyword box you can specify a FigId, a gene alias , an , or words from subsystem names, functional ... (last changed by BruceParrello) 2009-04-02T07:00:36Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/NmpdrBanner The NMPDR Banner and Search Box At the top of every page is a banner containing a search box, a graphic logo, and a menu bar. The actual graphic logo used depends ... (last changed by LeslieMcNeil) 2009-04-01T20:40:32Z lmcneil http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/ToolSearch Sequence Search The sequence search is designed to locate matching DNA or protein sequences among selected genomes in the NMPDR database. It includes three BLAST ... (last changed by BruceParrello) 2009-04-01T16:18:32Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/TargetSearch Protein Target Search Introduction The protein target search allows you to search for features using a boolean combination of various criteria. You can find the ... (last changed by BruceParrello) 2009-04-01T16:14:12Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/Alias Alias An alias is an alternative gene identifier, such as an accession number from another database (sometimes called a dbxref ), a locus tag, or a gene name. Inside ... (last changed by BruceParrello) 2009-04-01T15:32:47Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SubsystemFilter The subsystem filter is a dropdown menu on a search form that contains a list of subsystem names. It allows you to restrict the output to the features found ... (last changed by BruceParrello) 2009-04-01T06:30:53Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SubSearch Subsystems are organized in broad functional categories. The subsystem search tool displays the subsystems and their categories in the form of a tree, as shown on ... (last changed by BruceParrello) 2009-04-01T05:48:03Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SigGenes Use the signature genes tool to find genes that are common among one set of genomes , or differentiate one set from another. Like most searches in the NMPDR ... (last changed by BruceParrello) 2009-04-01T05:44:10Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SearchResults The results from an NmpdrSearch are displayed in a table, as shown below. Links will usually take you to the appropriate page in the GenomeViewer. Above the results ... (last changed by BruceParrello) 2009-04-01T05:33:40Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SearchPattern Search Patterns for use with the Scan Tool Literals (exact matches) The NMPDR pattern scanner accepts as input a specially formatted search pattern. In its simplest ... (last changed by BruceParrello) 2009-04-01T05:26:40Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SearchingByFunctionalRole Searching for Genes with Specific FunctionalRoles Using Keyword Seach There is no specific NMPDR search for genes by functional role; however, the functional ... (last changed by BruceParrello) 2009-04-01T05:03:40Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/OrgSumSearch Organism Summary Search The organism summary search is a simple search tool that displays genes in a single genome organized according to how confident we ... (last changed by BruceParrello) 2009-04-01T04:12:35Z parrello