http://www.nmpdr.org/FIG/wiki/view.cgi/FIG The FIG web of TWiki. TWiki is a Web-Based Collaboration Platform for the Enterprise. en-us Copyright 2008 by contributing authors TWiki Administrator [admin@figresearch.com] The contributing authors of NMPDR NMPDR http://www.nmpdr.org/FIG/wiki/view.cgi/FIG http://www.nmpdr.org/FIG/wiki/pub/logos/nmpdrlogo.png http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/FigFamDescription FigFams: Yet Another Set of Protein Families What Are the FigFams? Each individual FigFam is a set of protein sequences, along with a decision procedure. All of ... (last changed by BruceParrello) 2008-11-14T20:45:51Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SearchingByFunctionalRole Searching for Genes with Specific FunctionalRoles Using Keyword Seach There is no specific NMPDR search for genes by functional role; however, the functional ... (last changed by BruceParrello) 2008-10-17T04:49:13Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/NmpdrBanner At the top of every page is a banner containing a search box, a graphic logo, and a navigation bar. The actual graphic logo used depends on the width of your display ... (last changed by BruceParrello) 2008-10-17T04:41:02Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/FunctionalRole The functional role of a feature is the task it performs in the host organism. The role is stored in the NMPDR database as a descriptive phrase. Some functional ... (last changed by BruceParrello) 2008-10-17T01:31:06Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/FigFam FigFams are sets of ProteinSequences that are similar along their full length. Proteins are thought of as implementing one or more abstract FunctionalRoles. All of ... (last changed by BruceParrello) 2008-10-16T18:55:59Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/KeywordBox The NMPDR keyword search works like a typical search engine. You type in the appropriate words, and a list of genes will come back. Our keyword database contains millions ... (last changed by BruceParrello) 2008-10-16T15:57:15Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/GeneDisplayOptions The gene display options control the display of genes in the NMPDR Search Results . /GeneDisplayOptions.png If Sort by Function is checked, the search output ... (last changed by BruceParrello) 2008-10-15T19:04:09Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SeedEnvironment (last changed by BruceParrello) 2008-10-12T00:00:05Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/AliasesAndEquivalentGenes Basic Concepts In the NmpdrWebsite and SeedEnvironment databases, there is a general concept of a piece of DNA. In the databases and in the SEED, this is called a ... (last changed by BruceParrello) 2008-10-11T23:58:14Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/SpecialPurposeDatabases HOPS Database (Hypotheses and Open Problems revealed by Subsystems) Sequencing and analysis of hundreds, soon to be thousands, of genomes reveals multiple gaps in ... (last changed by BruceParrello) 2008-10-11T23:56:07Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/StandardAmbiguityCode The standard ambiguity codes can be used to represent sets of possible values in a DNA sequence. Code Nucleotides M {A, C} R {A, G} W {A ... (last changed by BruceParrello) 2008-10-11T23:54:14Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/WebHome The FIG Web This section of the site contains information to help you understand and use the NmpdrWebsite. Contents Glossary our terminology Grand ... (last changed by BruceParrello) 2008-10-11T23:53:21Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/BasicTemplate (last changed by BruceParrello) 2008-10-11T23:52:24Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/DatabasesAndCodes This section contains information about the data available on the NmpdrWebsite. (last changed by BruceParrello) 2008-10-11T23:49:31Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/AttributeDatabase var stuff ""; function GetDiagramData() { return stuff; } stuff '/FIG/AttributeDatabase, /, '; (last changed by BruceParrello) 2008-10-11T23:48:19Z parrello http://www.nmpdr.org/FIG/wiki/view.cgi/FIG/DNANucleotideCode The DNA nucleotide codes describe the four base compounds that make up a DNA sequence. The codes are as follows. Name Letter Type Pairs With Formula ... (last changed by BruceParrello) 2008-10-11T23:47:08Z parrello