Downloads
NMPDR has released new genome annotations for each of the focus organisms in modified GFF3 format. GFF3, described at the Sequence Ontology website, is a flat file format for describing genomic features. The formatted GFF3 files accessible below contain rows of records, each with nine tab-delimited fields: seqid, source, type, start, end, score, strand, phase, and attributes. The "score" and "phase" fields are not in use, so in each row, those fields contain the "." character. Each row describes a feature, which is a region on the DNA located between start and end nucleotide coordinates. To describe a protein-encoding gene, two rows are used to record two features at the same location: gene and CDS. FASTA formatted nucleotide and amino acid sequences follow the tab-delimited table of feature annotations.- Campylobacter
- Listeria
- Staphylococcus
- Streptococcus
- Vibrio
- Chlamydia
- Chlamydophila
- Haemophilus
- Neisseria
- Treponema
- Ureaplasma
Topic revision: r2 - 24 Aug 2008 - 17:41:41 - BruceParrello
NMPDR is a collaboration among researchers from the Computation Institute of the University of Chicago, the Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the National Center for Supercomputing Applications (NCSA) at the University of Illinois. NMPDR is funded by the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract HHSN266200400042C. Banner images are copyright © Dennis Kunkel.