NMPDR core pathogens and supporting genomes

Core Groups

An overview of the annotation status of the core groups of NMPDR pathogens is presented below. For a detailed view of each strain belonging to these pathogenic groups, click the group name in the left navigation bar or in the table.

Group name	Genomes	Protein Encoding Genes (PEGs)	Named genes in subsystems	Named genes not in subsystems	Hypothetical genes in subsystems	Hypothetical genes not in subsystems	RNAs
Campylobacter	12	21,117	10,293	6,734	320	4,099	426
Chlamydiaceae	11	11,147	4,675	3,076	73	3,553	401
Haemophilus	7	12,717	6,878	4,338	178	1,615	553
Listeria	16	51,612	22,314	17,547	979	11,755	1,627
Mycoplasma	12	8,899	4,005	2,955	53	2,334	478
Neisseria	5	11,317	4,705	3,544	147	1,664	362
Staphylococcus	17	44,565	20,365	12,899	1,417	11,650	1,638
Streptococcus	28	54,613	24,527	20,736	672	10,978	2,481
Treponema	2	3,826	1,160	1,553	15	1,193	105
Ureaplasma	14	9,128	3,920	2,604	71	2,570	84
Vibrio	18	71,298	30,884	24,686	1,077	16,117	2,148

Taxonomy

View the phylogenetic relationship of all the genomes in NMPDR as determined by rRNA analysis. Archaea appear at the top of the page, Bacteria in the center, and Eucarya are at the bottom. Use the "find in page" function of your browser to locate your favorite organism, or browse by scrolling.

Supporting Organisms

Select a genome and click GO to see it in the GenomeViewer.

Show genomes containing

Topic revision: r4 - 20 Aug 2008 - 19:50:57 - BruceParrello

NMPDR is a collaboration among researchers from the Computation Institute of the University of Chicago, the Fellowship for Interpretation of Genomes (FIG), Argonne National Laboratory, and the National Center for Supercomputing Applications (NCSA) at the University of Illinois. NMPDR is funded by the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services, under Contract HHSN266200400042C. Banner images are copyright © Dennis Kunkel.